The 2.0 version of rSNPBase

Variant report

Variant rs72647575
Chromosome Location chr4:148998397-148998398
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:148966600-149003800 Weak transcription NH-A brain
2 chr4:148968400-149004000 Weak transcription HUVEC blood vessel
3 chr4:148982000-149001200 Weak transcription Placenta Amnion Placenta Amnion
4 chr4:148984200-149003400 Weak transcription Stomach Mucosa stomach
5 chr4:148988800-149004400 Weak transcription Brain Anterior Caudate brain
6 chr4:148992200-149035000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr4:148993400-148999200 Strong transcription Ovary ovary
8 chr4:148993600-148998600 Strong transcription Colon Smooth Muscle Colon
9 chr4:148994200-149004800 Weak transcription Brain Substantia Nigra brain
10 chr4:148994400-148999200 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
11 chr4:148994600-148998400 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
12 chr4:148994600-148998600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
13 chr4:148994600-149002200 Weak transcription NHDF-Ad bronchial
14 chr4:148994600-149003000 Weak transcription HMEC breast
15 chr4:148994800-148998600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
16 chr4:148995400-148998600 ZNF genes & repeats Liver Liver
17 chr4:148995600-148998400 ZNF genes & repeats Adipose Nuclei Adipose
18 chr4:148995600-148998600 ZNF genes & repeats Fetal Stomach stomach
19 chr4:148995600-148998600 Strong transcription Gastric stomach
20 chr4:148995600-149003200 Weak transcription Osteobl bone
21 chr4:148996200-148998800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr4:148996200-148999600 Strong transcription Rectal Smooth Muscle rectum
23 chr4:148996200-149002200 Weak transcription Colonic Mucosa Colon
24 chr4:148996600-148999600 Strong transcription Fetal Muscle Trunk muscle
25 chr4:148996600-149002800 Strong transcription Duodenum Mucosa Duodenum
26 chr4:148996600-149004200 Weak transcription GM12878-XiMat blood
27 chr4:148996600-149004200 Weak transcription NHEK skin
28 chr4:148996800-149001000 Strong transcription Fetal Muscle Leg muscle
29 chr4:148996800-149002800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr4:148997000-148999600 Genic enhancers Left Ventricle heart
31 chr4:148997000-149001200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr4:148997000-149003400 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr4:148997000-149003400 Strong transcription Sigmoid Colon Sigmoid Colon
34 chr4:148997200-148998600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr4:148997200-148998600 Strong transcription Thymus Thymus
36 chr4:148997200-149000200 Weak transcription Brain Hippocampus Middle brain
37 chr4:148997200-149002200 Weak transcription Fetal Intestine Large intestine
38 chr4:148997200-149002400 Weak transcription Right Ventricle heart
39 chr4:148997200-149003000 Strong transcription Rectal Mucosa Donor 31 rectum
40 chr4:148997200-149003800 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr4:148997200-149004600 Weak transcription Fetal Kidney kidney
42 chr4:148997400-148998400 Weak transcription Primary T cells fromperipheralblood blood
43 chr4:148997400-148998600 Strong transcription Fetal Lung lung
44 chr4:148997400-148998600 ZNF genes & repeats NHLF lung
45 chr4:148997400-148999000 Strong transcription Esophagus oesophagus
46 chr4:148997400-148999800 Weak transcription Primary T cells from cord blood blood
47 chr4:148997400-149000000 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr4:148997400-149000600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr4:148997400-149001000 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr4:148997400-149001000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015