Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10958350	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675595	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12677359	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12677400	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12682009	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16918941	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62505374	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62505376	1.00[ASN][1000 genomes]
rs62505377	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505378	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505379	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505380	1.00[ASN][1000 genomes]
rs62505381	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505382	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62505384	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62505385	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62505387	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62505417	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6651352	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651353	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016778	1.00[ASN][1000 genomes]
rs72651165	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72651164	OPRK1	cis	cerebellar cortex	BrainEAC

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54132000-54149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:54137200-54148800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:54142800-54149000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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