Variant report

Variant	rs72652096
Chromosome Location	chr13:110813239-110813240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12428089	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16975420	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16975424	0.95[EUR][1000 genomes]
rs2275842	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275843	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2298241	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58814158	0.90[EUR][1000 genomes]
rs72652097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv901007	chr13:110793123-110813709	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110791200-110825600	Weak transcription	Esophagus	oesophagus
2	chr13:110791400-110813400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:110791400-110820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:110791400-110825800	Weak transcription	A549	lung
5	chr13:110791400-110868400	Weak transcription	Psoas Muscle	Psoas
6	chr13:110795800-110826000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:110798400-110825400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:110798800-110825600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:110798800-110853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:110799000-110821200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:110799600-110840200	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:110800000-110824800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:110800000-110825800	Strong transcription	Ovary	ovary
14	chr13:110800200-110837800	Strong transcription	NH-A	brain
15	chr13:110800600-110834200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr13:110800800-110821800	Strong transcription	Placenta	Placenta
17	chr13:110801000-110818400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:110801000-110822600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr13:110802400-110822000	Strong transcription	Colon Smooth Muscle	Colon
20	chr13:110802400-110842800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:110803000-110822000	Weak transcription	Small Intestine	intestine
22	chr13:110803000-110834200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:110803000-110840400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr13:110803200-110815800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr13:110803200-110826000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:110803200-110839800	Weak transcription	NHDF-Ad	bronchial
27	chr13:110803200-110839800	Strong transcription	Osteobl	bone
28	chr13:110803600-110840000	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr13:110804000-110825800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr13:110804800-110825200	Weak transcription	Brain Anterior Caudate	brain
31	chr13:110805200-110814400	Weak transcription	Gastric	stomach
32	chr13:110806200-110824000	Weak transcription	Liver	Liver
33	chr13:110806600-110860400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr13:110807800-110814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:110807800-110814400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:110807800-110826200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr13:110808000-110813600	Weak transcription	NHLF	lung
38	chr13:110808000-110824000	Weak transcription	Colonic Mucosa	Colon
39	chr13:110809000-110821400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:110809000-110822000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr13:110809200-110821200	Strong transcription	Fetal Lung	lung
42	chr13:110809200-110840000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr13:110809400-110817000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr13:110809400-110824800	Weak transcription	Fetal Brain Female	brain
45	chr13:110809600-110828000	Weak transcription	Fetal Brain Male	brain
46	chr13:110809800-110816400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr13:110809800-110819800	Strong transcription	Fetal Intestine Large	intestine
48	chr13:110809800-110820200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:110809800-110820600	Strong transcription	Fetal Stomach	stomach
50	chr13:110809800-110831200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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