Variant report

Variant	rs72652556
Chromosome Location	chr8:61835025-61835026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61833393..61835829-chr8:61842077..61844406,2	K562	blood:
2	chr8:61829988..61832075-chr8:61833915..61836317,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLVS1-1	chr8:61831540-61835815	NONHSAT126851

Variant related genes	Relation type
ENSG00000254777	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11780497	0.83[ASN][1000 genomes]
rs55664709	0.83[ASN][1000 genomes]
rs56339146	0.83[ASN][1000 genomes]
rs6982364	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv890947	chr8:61815886-61882751	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61826600-61835200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:61828400-61835600	Weak transcription	Spleen	Spleen
3	chr8:61829600-61835600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:61829800-61835200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr8:61829800-61835400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:61829800-61835400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:61829800-61835600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:61830400-61835400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:61830400-61835400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:61830600-61835400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:61830600-61835600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:61830600-61836000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:61830800-61835200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:61830800-61836000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr8:61831000-61836000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:61831200-61836000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:61831200-61836000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr8:61832000-61835600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:61832200-61835200	Weak transcription	Primary B cells from cord blood	blood
20	chr8:61832400-61838800	Weak transcription	HSMMtube	muscle
21	chr8:61833000-61835400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr8:61833200-61835400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr8:61833600-61839200	Enhancers	Primary T cells from cord blood	blood
24	chr8:61833800-61835400	Enhancers	Fetal Thymus	thymus
25	chr8:61833800-61836000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:61834000-61835400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr8:61834000-61836000	Active TSS	H9 Cell Line	embryonic stem cell
28	chr8:61834000-61836000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr8:61834000-61836200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr8:61834000-61836200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr8:61834200-61835200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:61834200-61835400	Weak transcription	Brain Anterior Caudate	brain
33	chr8:61834200-61835400	Weak transcription	Brain Hippocampus Middle	brain
34	chr8:61834200-61835400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr8:61834200-61836000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr8:61834200-61836000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr8:61834200-61836000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr8:61834200-61836000	Weak transcription	Brain Substantia Nigra	brain
39	chr8:61834200-61836200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:61834400-61835200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:61834400-61835400	Enhancers	Primary B cells from peripheral blood	blood
42	chr8:61834400-61835800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr8:61834400-61836200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
44	chr8:61834600-61835400	Bivalent Enhancer	Fetal Muscle Leg	muscle
45	chr8:61834600-61835600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
46	chr8:61834800-61835200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
47	chr8:61834800-61835200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:61834800-61835200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
49	chr8:61834800-61835200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
50	chr8:61834800-61835600	Enhancers	Fetal Heart	heart

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