Variant report

Variant	rs72653659
Chromosome Location	chr8:60197410-60197411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55811718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56269046	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56332532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72653660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72653666	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72653669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60195200-60197600	Enhancers	Fetal Stomach	stomach
2	chr8:60196000-60197800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:60196200-60197800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:60196200-60197800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:60196200-60197800	Enhancers	HMEC	breast
6	chr8:60196200-60213000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:60196400-60198000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:60196400-60198400	Enhancers	Dnd41	blood
9	chr8:60196800-60198000	Enhancers	Fetal Brain Male	brain
10	chr8:60197000-60198200	Enhancers	Primary B cells from peripheral blood	blood
11	chr8:60197000-60199000	Weak transcription	Fetal Lung	lung
12	chr8:60197200-60197800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:60197200-60197800	Enhancers	Placenta	Placenta
14	chr8:60197200-60197800	Enhancers	GM12878-XiMat	blood
15	chr8:60197200-60202600	Weak transcription	Fetal Brain Female	brain
16	chr8:60197400-60197600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr8:60197400-60198000	Enhancers	Primary B cells from cord blood	blood
18	chr8:60197400-60199000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links