Variant report

Variant	rs72657866
Chromosome Location	chr4:77392322-77392323
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212677	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212678	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10213455	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10213666	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1511819	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17254156	0.93[EUR][1000 genomes]
rs28363854	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28412520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28429729	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552812	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28561846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28591598	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602698	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635349	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635755	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28646100	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28678966	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28759703	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28789721	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28813417	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60240290	0.93[EUR][1000 genomes]
rs60660904	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657865	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72657868	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657874	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657889	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657890	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657897	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72657902	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72659704	1.00[EUR][1000 genomes]
rs72659707	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72659709	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72659713	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72659725	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72659727	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757941	chr4:77264596-77417457	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757069	chr4:77392092-77455405	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77385600-77393000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:77386000-77393000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:77387000-77394000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:77387600-77406000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:77389200-77393000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:77392000-77392600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:77392000-77392800	Weak transcription	Primary T cells from cord blood	blood
8	chr4:77392200-77396800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:77392200-77398800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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