Variant report

Variant	rs72659091
Chromosome Location	chr4:79691289-79691290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79683262..79685331-chr4:79691098..79694068,3	MCF-7	breast:
2	chr4:79589319..79591272-chr4:79690520..79692107,2	K562	blood:
3	chr4:79686100..79693924-chr4:79694940..79698947,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72659102	0.89[EUR][1000 genomes]
rs72660917	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79685800-79695400	Enhancers	K562	blood
2	chr4:79686800-79691600	Enhancers	Fetal Intestine Large	intestine
3	chr4:79687400-79696000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:79687600-79696200	Weak transcription	Osteobl	bone
5	chr4:79688600-79691600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:79688600-79692000	Enhancers	Fetal Intestine Small	intestine
7	chr4:79689000-79691600	Enhancers	NHLF	lung
8	chr4:79689200-79691600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:79689400-79691800	Enhancers	HUVEC	blood vessel
10	chr4:79689600-79691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:79689600-79691600	Enhancers	NHEK	skin
12	chr4:79689600-79693400	Weak transcription	GM12878-XiMat	blood
13	chr4:79689800-79692200	Weak transcription	Esophagus	oesophagus
14	chr4:79689800-79695200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:79689800-79696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:79689800-79696400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:79690000-79691600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:79690000-79696200	Weak transcription	HMEC	breast
19	chr4:79690200-79691400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:79690800-79691800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:79690800-79691800	Enhancers	Fetal Heart	heart
22	chr4:79690800-79695600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:79691000-79695800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:79691000-79695800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:79691000-79696000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:79691000-79696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:79691000-79696000	Weak transcription	NHDF-Ad	bronchial
28	chr4:79691000-79696200	Weak transcription	Primary T cells from cord blood	blood
29	chr4:79691000-79696200	Weak transcription	Fetal Thymus	thymus
30	chr4:79691000-79696200	Weak transcription	HSMM	muscle
31	chr4:79691200-79695600	Weak transcription	Dnd41	blood

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