Variant report

Variant	rs72659895
Chromosome Location	chr8:64089789-64089790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64079501..64081804-chr8:64088536..64091643,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270673	Chromatin interaction
ENSG00000185728	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11785601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890965	chr8:64006201-64104092	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv890966	chr8:64073650-64099240	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64082000-64092200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:64082000-64098800	Weak transcription	Esophagus	oesophagus
3	chr8:64082000-64099000	Weak transcription	Gastric	stomach
4	chr8:64082200-64092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:64082200-64098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:64082200-64098600	Weak transcription	Lung	lung
7	chr8:64082400-64098800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:64082600-64090200	Weak transcription	Thymus	Thymus
9	chr8:64082600-64098600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:64082600-64098600	Weak transcription	Colonic Mucosa	Colon
11	chr8:64082800-64098800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:64083000-64098600	Weak transcription	Fetal Kidney	kidney
13	chr8:64083400-64089800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:64083400-64098600	Weak transcription	HSMMtube	muscle
15	chr8:64083400-64098800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:64083600-64092000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:64083600-64098600	Weak transcription	Fetal Brain Male	brain
18	chr8:64083600-64098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:64083600-64098800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:64084000-64091000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:64084000-64092000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:64084000-64098800	Weak transcription	Brain Germinal Matrix	brain
23	chr8:64084200-64090400	Strong transcription	K562	blood
24	chr8:64084200-64091200	Strong transcription	Fetal Thymus	thymus
25	chr8:64084200-64091200	Strong transcription	NH-A	brain
26	chr8:64084200-64091400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr8:64084200-64091800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:64084200-64091800	Strong transcription	HSMM	muscle
29	chr8:64084200-64096200	Weak transcription	Brain Substantia Nigra	brain
30	chr8:64084200-64098600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:64084200-64098800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:64084200-64102200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:64084400-64091200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:64084400-64091800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:64084400-64091800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:64084400-64091800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:64084400-64094200	Weak transcription	Small Intestine	intestine
38	chr8:64084400-64097200	Weak transcription	NHLF	lung
39	chr8:64084400-64098600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:64084400-64098600	Weak transcription	Brain Anterior Caudate	brain
41	chr8:64084400-64098600	Weak transcription	Ovary	ovary
42	chr8:64084400-64098800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr8:64084400-64099000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr8:64084600-64091000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:64084600-64091800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:64085000-64090000	Strong transcription	HMEC	breast
47	chr8:64085200-64091800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:64085200-64091800	Strong transcription	Placenta	Placenta
49	chr8:64085400-64091000	Strong transcription	HUVEC	blood vessel
50	chr8:64085400-64094000	Weak transcription	NHEK	skin

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