Variant report

Variant	rs72659992
Chromosome Location	chr14:21167252-21167253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21166775..21167518-chr14:21323866..21324554,2	MCF-7	breast:
2	chr14:21164524..21167490-chr14:21438103..21441098,2	MCF-7	breast:
3	chr14:21165600..21167287-chr14:21323145..21324514,10	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR6S1-1	chr14:21167195-21167288	ENSG00000258451

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11628774	0.92[ASN][1000 genomes]
rs3748338	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045004	chr14:21124345-21180397	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv541975	chr14:21124345-21180397	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21153600-21169000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:21153600-21169600	Weak transcription	Esophagus	oesophagus
3	chr14:21153600-21169800	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:21154400-21168800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:21154600-21167600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:21155800-21167600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:21156200-21167400	Weak transcription	Colonic Mucosa	Colon
8	chr14:21157600-21169800	Weak transcription	Fetal Intestine Large	intestine
9	chr14:21159200-21171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:21159800-21169600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:21160600-21168400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:21162200-21167600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:21162200-21169800	Strong transcription	HepG2	liver
14	chr14:21162200-21171400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:21162200-21174800	Weak transcription	Left Ventricle	heart
16	chr14:21162400-21167600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:21162400-21167600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:21162400-21169800	Weak transcription	Lung	lung
19	chr14:21162400-21175000	Weak transcription	Fetal Lung	lung
20	chr14:21162800-21167400	Weak transcription	Ovary	ovary
21	chr14:21162800-21169000	Weak transcription	Fetal Intestine Small	intestine
22	chr14:21163200-21167600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:21164000-21170600	Weak transcription	Fetal Stomach	stomach
24	chr14:21164800-21167400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:21165600-21172600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:21166000-21169000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:21166000-21170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:21166200-21167800	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr14:21166200-21172200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr14:21166400-21167400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:21166400-21167800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:21166400-21169000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr14:21166400-21169400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:21166400-21175200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:21166400-21182800	Weak transcription	Brain Substantia Nigra	brain
36	chr14:21166600-21167600	Weak transcription	Adipose Nuclei	Adipose
37	chr14:21167000-21168800	Strong transcription	Liver	Liver
38	chr14:21167000-21169200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr14:21167200-21168000	Strong transcription	Aorta	Aorta
40	chr14:21167200-21168000	Genic enhancers	Gastric	stomach
41	chr14:21167200-21168000	Strong transcription	Pancreas	Pancrea

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