Variant report

Variant	rs72660501
Chromosome Location	chr1:56806153-56806154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72662220	1.00[AFR][1000 genomes]
rs72662223	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1015037	chr1:56784322-56814739	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
2	chr1:56798400-56807800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:56805000-56806200	Enhancers	Pancreas	Pancrea
4	chr1:56805000-56806200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:56805000-56806200	Enhancers	Hela-S3	cervix
6	chr1:56805000-56806600	Enhancers	Psoas Muscle	Psoas
7	chr1:56805600-56806400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:56805600-56806400	Enhancers	Fetal Muscle Leg	muscle
9	chr1:56805600-56806400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr1:56805600-56806600	Enhancers	Left Ventricle	heart
11	chr1:56805800-56806400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:56805800-56806400	Enhancers	NHDF-Ad	bronchial
13	chr1:56806000-56806200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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