Variant report

Variant	rs72660779
Chromosome Location	chr5:106947653-106947654
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72660776	1.00[EUR][1000 genomes]
rs72660778	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106933400-106952600	Weak transcription	Aorta	Aorta
2	chr5:106941400-106950800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:106941600-106952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:106942200-106950200	Weak transcription	NHDF-Ad	bronchial
5	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:106944200-106949600	Weak transcription	Fetal Kidney	kidney
7	chr5:106944400-106948200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106944400-106948400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:106944400-106950200	Weak transcription	Fetal Lung	lung
10	chr5:106944600-106948600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:106944600-106950800	Weak transcription	Fetal Heart	heart
12	chr5:106944600-106952200	Weak transcription	Fetal Brain Male	brain
13	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:106945200-106948600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:106945600-106953200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:106946400-106947800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:106946400-106947800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:106946800-106948000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:106946800-106948400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:106947000-106948000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:106947200-106951000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:106947200-106951000	Enhancers	A549	lung
23	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
24	chr5:106947400-106952800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:106947600-106950800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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