Variant report

Variant	rs72661135
Chromosome Location	chr6:29737765-29737766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29725785..29727435-chr6:29736523..29738044,2	MCF-7	breast:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs11751282	0.86[ASN][1000 genomes]
rs11751333	0.82[ASN][1000 genomes]
rs11751381	0.98[ASN][1000 genomes]
rs11751397	0.98[ASN][1000 genomes]
rs11751915	0.98[ASN][1000 genomes]
rs11752530	0.86[ASN][1000 genomes]
rs11753758	1.00[ASN][1000 genomes]
rs11753812	0.98[ASN][1000 genomes]
rs11753867	1.00[ASN][1000 genomes]
rs11753872	1.00[ASN][1000 genomes]
rs11754577	0.84[ASN][1000 genomes]
rs11755659	1.00[ASN][1000 genomes]
rs11756053	0.84[ASN][1000 genomes]
rs11757480	0.84[ASN][1000 genomes]
rs11757929	0.86[ASN][1000 genomes]
rs11757937	0.86[ASN][1000 genomes]
rs11757990	0.86[ASN][1000 genomes]
rs11758019	0.84[ASN][1000 genomes]
rs11758056	0.86[ASN][1000 genomes]
rs11758087	0.86[ASN][1000 genomes]
rs11759271	0.84[ASN][1000 genomes]
rs11759378	0.84[ASN][1000 genomes]
rs12110334	1.00[ASN][1000 genomes]
rs12110682	1.00[ASN][1000 genomes]
rs12111521	1.00[ASN][1000 genomes]
rs17178735	0.82[ASN][1000 genomes]
rs17178749	0.82[ASN][1000 genomes]
rs17185076	0.82[ASN][1000 genomes]
rs17185090	1.00[ASN][1000 genomes]
rs28578751	1.00[ASN][1000 genomes]
rs28802633	1.00[ASN][1000 genomes]
rs28840978	1.00[ASN][1000 genomes]
rs34416032	1.00[ASN][1000 genomes]
rs34735344	1.00[ASN][1000 genomes]
rs34792092	1.00[ASN][1000 genomes]
rs35197595	1.00[ASN][1000 genomes]
rs35368450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35728173	0.98[ASN][1000 genomes]
rs35794939	1.00[ASN][1000 genomes]
rs36073133	1.00[ASN][1000 genomes]
rs36106954	1.00[ASN][1000 genomes]
rs3734820	1.00[ASN][1000 genomes]
rs3892549	1.00[ASN][1000 genomes]
rs56091723	1.00[ASN][1000 genomes]
rs56182102	1.00[ASN][1000 genomes]
rs56183732	0.98[ASN][1000 genomes]
rs56241766	1.00[ASN][1000 genomes]
rs56315562	0.91[ASN][1000 genomes]
rs58147175	1.00[ASN][1000 genomes]
rs58477674	0.95[ASN][1000 genomes]
rs59396305	0.98[ASN][1000 genomes]
rs59408697	1.00[ASN][1000 genomes]
rs6932033	1.00[ASN][1000 genomes]
rs6932384	1.00[ASN][1000 genomes]
rs72507835	1.00[ASN][1000 genomes]
rs72507836	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72507838	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72507839	0.86[ASN][1000 genomes]
rs73745404	1.00[ASN][1000 genomes]
rs73745405	0.98[ASN][1000 genomes]
rs73745406	1.00[ASN][1000 genomes]
rs73745429	1.00[ASN][1000 genomes]
rs73745430	1.00[ASN][1000 genomes]
rs73745431	1.00[ASN][1000 genomes]
rs73745450	0.98[ASN][1000 genomes]
rs73745455	1.00[ASN][1000 genomes]
rs73745456	1.00[ASN][1000 genomes]
rs73745473	1.00[ASN][1000 genomes]
rs73745481	1.00[ASN][1000 genomes]
rs73745483	1.00[ASN][1000 genomes]
rs73745488	1.00[ASN][1000 genomes]
rs73745489	1.00[ASN][1000 genomes]
rs73745491	1.00[ASN][1000 genomes]
rs73745492	1.00[ASN][1000 genomes]
rs73745494	1.00[ASN][1000 genomes]
rs73747518	0.86[ASN][1000 genomes]
rs73747522	0.86[ASN][1000 genomes]
rs73747524	0.86[ASN][1000 genomes]
rs73747525	0.86[ASN][1000 genomes]
rs73747534	0.82[ASN][1000 genomes]
rs7739070	1.00[ASN][1000 genomes]
rs7742749	0.98[ASN][1000 genomes]
rs7758067	1.00[ASN][1000 genomes]
rs7758742	1.00[ASN][1000 genomes]
rs7759746	1.00[ASN][1000 genomes]
rs7775919	1.00[ASN][1000 genomes]
rs9500984	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv883535	chr6:29725321-29741338	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
13	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
14	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
16	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
17	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29731400-29739000	Weak transcription	Spleen	Spleen
2	chr6:29731600-29738800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:29733600-29755800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:29736600-29738200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:29736600-29739000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:29737000-29737800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:29737000-29738000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links