Variant report

Variant	rs72664362
Chromosome Location	chr1:57018260-57018261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57015989..57018935-chr1:57031658..57034048,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55751848	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7551402	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57001200-57018800	Weak transcription	A549	lung
2	chr1:57001800-57018600	Weak transcription	Small Intestine	intestine
3	chr1:57001800-57021800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:57002800-57018600	Weak transcription	Thymus	Thymus
5	chr1:57003200-57019800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:57007400-57028400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:57009600-57028000	Weak transcription	Fetal Kidney	kidney
8	chr1:57010400-57019200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:57010400-57019600	Enhancers	Right Ventricle	heart
10	chr1:57011000-57020200	Enhancers	Brain Hippocampus Middle	brain
11	chr1:57012600-57019200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:57012600-57019600	Enhancers	Brain Angular Gyrus	brain
13	chr1:57012600-57020000	Enhancers	Adipose Nuclei	Adipose
14	chr1:57013000-57019400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:57013000-57019400	Genic enhancers	Fetal Muscle Leg	muscle
16	chr1:57013000-57019400	Enhancers	Psoas Muscle	Psoas
17	chr1:57013000-57019800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:57013000-57020000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:57013200-57019200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:57013200-57021000	Enhancers	Brain Cingulate Gyrus	brain
21	chr1:57013400-57018600	Enhancers	Liver	Liver
22	chr1:57014000-57026000	Weak transcription	Fetal Intestine Large	intestine
23	chr1:57014400-57018800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:57014800-57019000	Weak transcription	Osteobl	bone
25	chr1:57014800-57019600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:57015000-57019000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:57015200-57018600	Strong transcription	NHLF	lung
28	chr1:57015200-57019000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:57015200-57019400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:57015600-57018600	Enhancers	Fetal Brain Male	brain
31	chr1:57015800-57019800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr1:57015800-57021200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr1:57016000-57038600	Weak transcription	HSMMtube	muscle
34	chr1:57016200-57020000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr1:57016400-57020000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr1:57016600-57019600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:57016600-57022200	Genic enhancers	NHDF-Ad	bronchial
38	chr1:57016800-57019600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr1:57016800-57019800	Genic enhancers	HepG2	liver
40	chr1:57016800-57023400	Weak transcription	Fetal Intestine Small	intestine
41	chr1:57017200-57018400	Weak transcription	Fetal Stomach	stomach
42	chr1:57017200-57018800	Weak transcription	HSMM	muscle
43	chr1:57017200-57019600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr1:57017400-57018400	Weak transcription	Aorta	Aorta
45	chr1:57017400-57018600	Strong transcription	Placenta	Placenta
46	chr1:57017400-57019600	Genic enhancers	Fetal Lung	lung
47	chr1:57017400-57019800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr1:57017400-57020800	Weak transcription	Spleen	Spleen
49	chr1:57017400-57025000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr1:57017400-57035400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links