Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12079421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408137	0.83[AMR][1000 genomes]
rs1886138	0.81[AMR][1000 genomes]
rs4912284	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4997596	0.81[AMR][1000 genomes]
rs55733745	0.83[AMR][1000 genomes]
rs55757801	0.83[AMR][1000 genomes]
rs56016455	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs723714	0.83[AMR][1000 genomes]
rs72666110	0.83[AMR][1000 genomes]
rs72666111	0.83[AMR][1000 genomes]
rs72666112	0.83[AMR][1000 genomes]
rs72666114	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72666115	0.81[AMR][1000 genomes]
rs72666118	0.81[AMR][1000 genomes]
rs72666122	0.81[AMR][1000 genomes]
rs72666124	0.81[AMR][1000 genomes]
rs72666127	0.81[AMR][1000 genomes]
rs72666129	0.81[AMR][1000 genomes]
rs72666132	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58274800-58277600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:58275400-58275800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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