Variant report

Variant	rs72664902
Chromosome Location	chr14:35753742-35753743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35753115..35758805-chr14:35759547..35762790,7	MCF-7	breast:
2	chr14:35753303..35755635-chr14:35756425..35758168,2	MCF-7	breast:
3	chr14:35750852..35757164-chr14:35871890..35876148,8	MCF-7	breast:
4	chr14:35749143..35751383-chr14:35753309..35755474,3	MCF-7	breast:
5	chr14:35746453..35748707-chr14:35753139..35754823,2	MCF-7	breast:
6	chr14:35752690..35754734-chr14:35759585..35761550,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-173D9.3.1-3	chr14:35751529-35754015	l_963_chr14:35700899-35775195_brain

No data

Variant related genes	Relation type
ENSG00000100902	Chromatin interaction
ENSG00000265530	Chromatin interaction
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2295463	0.86[EUR][1000 genomes]
rs72664885	0.80[EUR][1000 genomes]
rs72664892	0.86[EUR][1000 genomes]
rs72666610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
8	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
9	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35684600-35760800	Weak transcription	HSMM	muscle
2	chr14:35706800-35760800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:35716800-35760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:35716800-35761000	Weak transcription	Spleen	Spleen
5	chr14:35717000-35760800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:35717600-35753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:35722000-35754000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:35722000-35760800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:35724200-35756400	Weak transcription	Left Ventricle	heart
10	chr14:35727200-35754600	Weak transcription	NHDF-Ad	bronchial
11	chr14:35727200-35756400	Weak transcription	Stomach Mucosa	stomach
12	chr14:35727200-35761000	Weak transcription	NHLF	lung
13	chr14:35727400-35754000	Weak transcription	HUVEC	blood vessel
14	chr14:35728400-35754600	Weak transcription	K562	blood
15	chr14:35728400-35755000	Weak transcription	Colonic Mucosa	Colon
16	chr14:35730200-35760600	Weak transcription	Fetal Brain Female	brain
17	chr14:35731800-35756000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:35734400-35760600	Weak transcription	Right Ventricle	heart
19	chr14:35734400-35760800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:35736000-35760800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:35736600-35754000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:35737400-35761000	Weak transcription	Gastric	stomach
23	chr14:35738800-35759400	Weak transcription	Placenta	Placenta
24	chr14:35740000-35754800	Weak transcription	Adipose Nuclei	Adipose
25	chr14:35740000-35756600	Weak transcription	NHEK	skin
26	chr14:35741200-35760800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:35742800-35755800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:35743200-35756400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:35743400-35760800	Weak transcription	HMEC	breast
30	chr14:35743600-35754600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:35743600-35760800	Weak transcription	Brain Anterior Caudate	brain
32	chr14:35743800-35760800	Weak transcription	Osteobl	bone
33	chr14:35744000-35754800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:35744000-35756200	Weak transcription	Liver	Liver
35	chr14:35744000-35757600	Weak transcription	Lung	lung
36	chr14:35744000-35760800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:35744000-35760800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr14:35744000-35760800	Weak transcription	Brain Substantia Nigra	brain
39	chr14:35744000-35760800	Weak transcription	Fetal Lung	lung
40	chr14:35744000-35760800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr14:35744000-35761000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:35744400-35756200	Weak transcription	Fetal Intestine Large	intestine
43	chr14:35744400-35760800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr14:35744800-35754000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr14:35744800-35754200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:35744800-35760800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:35745000-35756600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:35745200-35760600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr14:35745200-35760800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr14:35745400-35760800	Weak transcription	Brain Cingulate Gyrus	brain

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