Variant report

Variant	rs72664967
Chromosome Location	chr4:85872992-85872993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85871995..85875052-chr4:85885943..85888093,3	MCF-7	breast:
2	chr4:85871120..85875052-chr4:85876385..85879344,3	MCF-7	breast:
3	chr4:85857756..85860501-chr4:85872176..85873960,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180769	Chromatin interaction
ENSG00000163625	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17369165	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4627854	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv508295	chr4:85822802-85885027	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85798800-85873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:85845600-85882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:85849200-85876000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:85851200-85876000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:85860600-85877000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:85861200-85873600	Weak transcription	HUVEC	blood vessel
7	chr4:85864400-85873200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:85864400-85876400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:85864400-85877200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:85865200-85876000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:85865200-85886400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:85865800-85885400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:85866000-85886200	Weak transcription	Fetal Intestine Small	intestine
14	chr4:85866400-85873200	Weak transcription	NHLF	lung
15	chr4:85866400-85879200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:85866600-85873200	Weak transcription	Osteobl	bone
17	chr4:85866800-85884600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:85867800-85878600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:85869600-85879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:85869800-85873200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:85869800-85873200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:85869800-85879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:85870000-85876000	Weak transcription	Left Ventricle	heart
24	chr4:85870200-85873000	Weak transcription	Right Ventricle	heart
25	chr4:85870200-85876000	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:85870200-85879200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr4:85870400-85876000	Weak transcription	Fetal Kidney	kidney
28	chr4:85870400-85876000	Weak transcription	Ovary	ovary
29	chr4:85870400-85876000	Weak transcription	Right Atrium	heart
30	chr4:85870400-85879200	Weak transcription	Adipose Nuclei	Adipose
31	chr4:85870400-85880800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr4:85870600-85876400	Weak transcription	Fetal Heart	heart
33	chr4:85871000-85873000	Weak transcription	Stomach Mucosa	stomach
34	chr4:85871000-85876400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:85871000-85879200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:85871800-85873800	Enhancers	Brain Anterior Caudate	brain
37	chr4:85871800-85874600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:85871800-85874600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:85872000-85873000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr4:85872000-85873200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:85872000-85886600	Weak transcription	Lung	lung
42	chr4:85872200-85873200	Weak transcription	Liver	Liver
43	chr4:85872400-85873400	Enhancers	Brain Hippocampus Middle	brain
44	chr4:85872400-85873600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:85872400-85873800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:85872600-85873800	Enhancers	Brain Cingulate Gyrus	brain
47	chr4:85872600-85874000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:85872600-85874200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr4:85872600-85874400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:85872800-85873200	Enhancers	A549	lung

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