Variant report

Variant	rs72665028
Chromosome Location	chr4:103992054-103992055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103788708..103790456-chr4:103990181..103992943,2	K562	blood:
2	chr4:103981670..103984675-chr4:103989159..103992236,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145354	Chromatin interaction
ENSG00000109332	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72665083	1.00[AFR][1000 genomes]
rs72665088	1.00[AFR][1000 genomes]
rs72666828	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103941400-103996600	Weak transcription	Lung	lung
2	chr4:103941800-103994600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:103942000-103994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:103942000-103995200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:103947800-103996000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:103952400-103994600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:103952800-103996600	Weak transcription	Fetal Stomach	stomach
8	chr4:103954000-103996200	Weak transcription	Gastric	stomach
9	chr4:103957600-103995400	Weak transcription	Ovary	ovary
10	chr4:103962800-103995000	Weak transcription	Small Intestine	intestine
11	chr4:103963600-103996600	Weak transcription	Pancreas	Pancrea
12	chr4:103965800-103994800	Weak transcription	K562	blood
13	chr4:103966000-103995400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:103966000-103996600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:103966600-103996600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:103968400-103996200	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:103970200-103995000	Weak transcription	Fetal Brain Male	brain
18	chr4:103970200-103996600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:103970400-103996600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:103970600-103996000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:103970600-103996200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:103970800-103995000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:103970800-103995400	Weak transcription	Primary B cells from cord blood	blood
24	chr4:103970800-103996000	Weak transcription	Primary T cells from cord blood	blood
25	chr4:103970800-103996600	Weak transcription	Adipose Nuclei	Adipose
26	chr4:103971000-103996000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:103971000-103996200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:103971200-103995400	Weak transcription	Brain Anterior Caudate	brain
29	chr4:103971200-103996200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:103971200-103996200	Weak transcription	Left Ventricle	heart
31	chr4:103971400-103995200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr4:103971400-103996200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr4:103971600-103994400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr4:103971600-103996600	Weak transcription	Fetal Thymus	thymus
35	chr4:103972200-103996800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:103972600-103996000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:103972600-103996200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:103972600-103996600	Weak transcription	Aorta	Aorta
39	chr4:103972800-103996200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:103979800-103993800	Weak transcription	Hela-S3	cervix
41	chr4:103983400-103994400	Weak transcription	Fetal Brain Female	brain
42	chr4:103984000-103996000	Weak transcription	Brain Substantia Nigra	brain
43	chr4:103985600-103995800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:103987000-103996600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:103987600-103994000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:103987600-103994000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:103987600-103994600	Weak transcription	HUVEC	blood vessel
48	chr4:103987600-103995200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr4:103987600-103995400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr4:103987600-103995600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links