Variant report

Variant	rs72667438
Chromosome Location	chr8:105320836-105320837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1001169	0.89[EUR][1000 genomes]
rs11993130	0.89[EUR][1000 genomes]
rs1868009	0.83[EUR][1000 genomes]
rs4449756	0.89[EUR][1000 genomes]
rs60606944	0.89[EUR][1000 genomes]
rs67220978	0.89[EUR][1000 genomes]
rs7007591	0.89[EUR][1000 genomes]
rs72667412	0.87[EUR][1000 genomes]
rs72667414	0.89[EUR][1000 genomes]
rs72667415	0.89[EUR][1000 genomes]
rs72667428	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72667430	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667441	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667444	0.98[ASN][1000 genomes]
rs72667445	0.98[ASN][1000 genomes]
rs72685064	0.91[AMR][1000 genomes]
rs750433	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105320800-105321200	Flanking Active TSS	HepG2	liver
2	chr8:105320800-105321400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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