Variant report

Variant	rs72668805
Chromosome Location	chr14:42218338-42218339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55778772	1.00[AMR][1000 genomes]
rs72670403	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv533968	chr14:41882101-42327882	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2758353	chr14:42045873-42259511	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759983	chr14:42045873-42259511	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv901738	chr14:42145461-42302552	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901739	chr14:42194373-42270916	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42217800-42218600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:42218200-42218400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr14:42218200-42218400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr14:42218200-42218400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr14:42218200-42218400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr14:42218200-42218400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:42218200-42218600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:42218200-42218600	Enhancers	Ovary	ovary
9	chr14:42218200-42219000	Active TSS	Rectal Smooth Muscle	rectum
10	chr14:42218200-42219200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:42218200-42219200	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr14:42218200-42219200	Active TSS	Colon Smooth Muscle	Colon
13	chr14:42218200-42219200	Flanking Active TSS	Dnd41	blood
14	chr14:42218200-42219200	Active TSS	NHDF-Ad	bronchial
15	chr14:42218200-42219400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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