Variant report
| Variant | rs72670577 |
|---|---|
| Chromosome Location | chr4:124720653-124720654 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12233664 | 0.83[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12233817 | 0.83[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1425417 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17007390 | 0.84[ASN][1000 genomes] |
| rs57187481 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72670547 | 0.83[AFR][1000 genomes] |
| rs72670548 | 0.83[AFR][1000 genomes] |
| rs72670562 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72670563 | 0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72670565 | 0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72670567 | 0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72670569 | 0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs72670571 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72670580 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72670583 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72670584 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72670586 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72670591 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72670592 | 0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72670594 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs919014 | 0.83[AFR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34581 | chr4:124271321-125247395 | Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001751 | chr4:124693346-124733305 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 3 | esv2754745 | chr4:124698055-124770865 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:124719200-124723600 | Weak transcription | Fetal Intestine Small | intestine |
