Variant report

Variant	rs72670873
Chromosome Location	chr8:88623458-88623459
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10093384	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12675590	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs28671371	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72670869	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72670871	0.80[ASN][1000 genomes]
rs7844301	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891166	chr8:88578142-88696839	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv891167	chr8:88600593-88846956	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88620400-88623800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:88621000-88623600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:88621000-88623800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:88621200-88623600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:88621200-88623800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:88621400-88623600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:88623200-88623800	Active TSS	Brain Substantia Nigra	brain
8	chr8:88623200-88624800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:88623200-88625000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:88623200-88625400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:88623400-88623800	Active TSS	Brain Hippocampus Middle	brain
12	chr8:88623400-88623800	Active TSS	Fetal Lung	lung
13	chr8:88623400-88624400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links