Variant report

Variant	rs72671981
Chromosome Location	chr4:97651745-97651746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10010320	1.00[ASN][1000 genomes]
rs13119190	1.00[ASN][1000 genomes]
rs13122513	1.00[ASN][1000 genomes]
rs13133806	1.00[ASN][1000 genomes]
rs17025751	1.00[ASN][1000 genomes]
rs17025761	1.00[ASN][1000 genomes]
rs17025766	1.00[ASN][1000 genomes]
rs1922830	1.00[ASN][1000 genomes]
rs1922831	1.00[ASN][1000 genomes]
rs34581814	1.00[ASN][1000 genomes]
rs35505691	1.00[ASN][1000 genomes]
rs35896774	1.00[ASN][1000 genomes]
rs6532644	1.00[ASN][1000 genomes]
rs6845987	1.00[ASN][1000 genomes]
rs7666480	1.00[ASN][1000 genomes]
rs9998457	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2757944	chr4:97509566-97809092	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759268	chr4:97509566-97809092	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879636	chr4:97563218-97680928	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv879637	chr4:97563218-97685296	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv594918	chr4:97568242-97698070	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1004835	chr4:97585013-97749279	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv470058	chr4:97591085-97662437	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv879639	chr4:97591085-97685296	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv470059	chr4:97627739-97673181	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv594919	chr4:97627739-97688309	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97650400-97651800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:97650400-97653000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:97650800-97652400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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