Variant report

Variant	rs72673163
Chromosome Location	chr8:88844656-88844657
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:88843768..88844920-chr8:89332543..89333442,5	MCF-7	breast:
2	chr8:88594302..88595226-chr8:88844378..88845025,3	MCF-7	breast:
3	chr8:88843989..88844789-chr8:89301629..89302601,7	MCF-7	breast:
4	chr8:88837049..88839934-chr8:88843106..88844697,2	MCF-7	breast:
5	chr8:88844023..88845076-chr8:89068948..89070439,5	MCF-7	breast:
6	chr8:88844020..88845021-chr8:89301693..89302582,7	MCF-7	breast:
7	chr8:88844099..88844976-chr8:89566466..89567055,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10955429	0.87[ASN][1000 genomes]
rs16873533	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16873813	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3885019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67679715	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72673173	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72673191	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891167	chr8:88600593-88846956	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831384	chr8:88746718-88917248	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv891168	chr8:88803575-88901809	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv891169	chr8:88803575-88948825	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv831385	chr8:88807262-88965472	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1023041	chr8:88820473-88874436	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88843800-88845200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:88843800-88845400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:88843800-88845600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:88844000-88845800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:88844200-88845000	Enhancers	NHDF-Ad	bronchial
6	chr8:88844200-88845200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr8:88844200-88845200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:88844200-88845200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:88844200-88845600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:88844200-88845600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:88844200-88845800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:88844200-88845800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:88844400-88845200	Enhancers	HUVEC	blood vessel
14	chr8:88844400-88845200	Enhancers	NH-A	brain
15	chr8:88844400-88845600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:88844400-88845600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:88844400-88845600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:88844600-88845000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr8:88844600-88845000	Enhancers	Fetal Kidney	kidney
20	chr8:88844600-88845200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:88844600-88845200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:88844600-88845200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:88844600-88845200	Enhancers	Osteobl	bone
24	chr8:88844600-88845400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr8:88844600-88845400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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