Variant report
Variant | rs72673777 |
---|---|
Chromosome Location | chr4:120113992-120113993 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10002207 | 1.00[EUR][1000 genomes] |
rs10007353 | 0.89[EUR][1000 genomes] |
rs10008206 | 1.00[EUR][1000 genomes] |
rs10011628 | 0.89[EUR][1000 genomes] |
rs10011815 | 0.89[EUR][1000 genomes] |
rs10017227 | 1.00[EUR][1000 genomes] |
rs10020251 | 1.00[EUR][1000 genomes] |
rs10027388 | 0.89[EUR][1000 genomes] |
rs10027543 | 1.00[EUR][1000 genomes] |
rs10027649 | 1.00[EUR][1000 genomes] |
rs10027729 | 0.89[EUR][1000 genomes] |
rs10033458 | 0.89[EUR][1000 genomes] |
rs11934185 | 0.89[EUR][1000 genomes] |
rs11934309 | 0.89[EUR][1000 genomes] |
rs11935277 | 0.89[EUR][1000 genomes] |
rs11935490 | 0.89[EUR][1000 genomes] |
rs11936641 | 0.89[EUR][1000 genomes] |
rs11943221 | 0.89[EUR][1000 genomes] |
rs13434885 | 0.89[EUR][1000 genomes] |
rs13435642 | 0.89[EUR][1000 genomes] |
rs17050012 | 1.00[EUR][1000 genomes] |
rs17050027 | 0.89[EUR][1000 genomes] |
rs17050032 | 0.89[EUR][1000 genomes] |
rs17050065 | 0.87[EUR][1000 genomes] |
rs17839092 | 0.89[EUR][1000 genomes] |
rs2389726 | 0.89[EUR][1000 genomes] |
rs28404363 | 0.89[EUR][1000 genomes] |
rs28429127 | 0.89[EUR][1000 genomes] |
rs28477374 | 1.00[EUR][1000 genomes] |
rs28480491 | 0.89[EUR][1000 genomes] |
rs28507886 | 0.89[EUR][1000 genomes] |
rs28526325 | 0.89[EUR][1000 genomes] |
rs28682357 | 0.89[EUR][1000 genomes] |
rs28687038 | 0.89[EUR][1000 genomes] |
rs28691747 | 0.89[EUR][1000 genomes] |
rs28734069 | 1.00[EUR][1000 genomes] |
rs4370120 | 0.89[EUR][1000 genomes] |
rs4608795 | 0.89[EUR][1000 genomes] |
rs56231990 | 0.87[EUR][1000 genomes] |
rs72673713 | 1.00[EUR][1000 genomes] |
rs72673721 | 0.89[EUR][1000 genomes] |
rs72673726 | 0.89[EUR][1000 genomes] |
rs72673752 | 0.87[EUR][1000 genomes] |
rs72673794 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72676009 | 1.00[EUR][1000 genomes] |
rs72676016 | 0.87[EUR][1000 genomes] |
rs7666114 | 0.89[EUR][1000 genomes] |
rs7666154 | 0.89[EUR][1000 genomes] |
rs7666292 | 0.89[EUR][1000 genomes] |
rs9307467 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
2 | nsv948802 | chr4:119844269-120208926 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
3 | nsv1008115 | chr4:120007913-120143849 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
4 | nsv522386 | chr4:120009147-120115379 | Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1012868 | chr4:120014630-120464880 | Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
6 | nsv537232 | chr4:120014630-120464880 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:120079800-120114200 | Weak transcription | Aorta | Aorta |
2 | chr4:120101000-120132400 | Weak transcription | Left Ventricle | heart |
3 | chr4:120106200-120119200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr4:120112200-120116400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
5 | chr4:120113000-120125200 | Weak transcription | Right Atrium | heart |
6 | chr4:120113400-120114000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |