Variant report

Variant	rs72676879
Chromosome Location	chr1:70460304-70460305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17131225	1.00[AMR][1000 genomes]
rs72675080	1.00[EUR][1000 genomes]
rs72675096	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv871018	chr1:70450024-70496379	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv526839	chr1:70459886-70475794	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70450800-70481200	Weak transcription	Fetal Brain Female	brain
2	chr1:70457200-70460400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:70457800-70464600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:70458400-70460800	Enhancers	Fetal Lung	lung
5	chr1:70458600-70461000	Enhancers	HUVEC	blood vessel
6	chr1:70458800-70460400	Enhancers	Fetal Kidney	kidney
7	chr1:70458800-70460400	Enhancers	Hela-S3	cervix
8	chr1:70459200-70460400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:70459400-70460400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:70459600-70460400	Enhancers	HSMM	muscle
11	chr1:70459600-70460400	Enhancers	NHDF-Ad	bronchial
12	chr1:70459600-70460600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:70459800-70460400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:70459800-70460400	Enhancers	Osteobl	bone
15	chr1:70460000-70460600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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