Variant report

Variant	rs72677234
Chromosome Location	chr2:179482413-179482414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:179481398-179487216	K562	blood:	n/a	n/a

Variant related genes	Relation type
TTN-AS1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35965350	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834468	chr2:179351116-179533625	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2757841	chr2:179409072-179608242	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2759103	chr2:179409072-179608242	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1000642	chr2:179438866-179503211	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179388800-179495800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:179408000-179503000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:179438400-179518200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:179440600-179494000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:179440600-179505200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:179441400-179498800	Weak transcription	Brain Anterior Caudate	brain
7	chr2:179441600-179495000	Weak transcription	Fetal Intestine Small	intestine
8	chr2:179442000-179484200	Weak transcription	Colonic Mucosa	Colon
9	chr2:179442800-179492000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:179442800-179493400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:179444800-179484400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:179461800-179484000	Weak transcription	Fetal Brain Male	brain
13	chr2:179463800-179492000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:179464600-179497400	Weak transcription	GM12878-XiMat	blood
15	chr2:179465600-179483600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:179465800-179483200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:179466200-179484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:179468000-179486800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr2:179468400-179484200	Strong transcription	HSMMtube	muscle
20	chr2:179468400-179486600	Strong transcription	Fetal Muscle Leg	muscle
21	chr2:179468400-179489200	Strong transcription	Left Ventricle	heart
22	chr2:179468400-179490400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:179468600-179484600	Strong transcription	Right Ventricle	heart
24	chr2:179468600-179486400	Strong transcription	Primary B cells from cord blood	blood
25	chr2:179468600-179486400	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr2:179468600-179486400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr2:179468600-179489600	Strong transcription	Primary T cells from cord blood	blood
28	chr2:179468600-179490000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr2:179470000-179482600	Weak transcription	Gastric	stomach
30	chr2:179470000-179489800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr2:179471400-179483800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr2:179471800-179483400	Strong transcription	Primary hematopoietic stem cells	blood
33	chr2:179471800-179483400	Strong transcription	Fetal Intestine Large	intestine
34	chr2:179472400-179502600	Weak transcription	Brain Substantia Nigra	brain
35	chr2:179472800-179489400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:179472800-179498600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr2:179473200-179498000	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:179473800-179491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr2:179474600-179482600	Weak transcription	Aorta	Aorta
40	chr2:179475400-179488200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr2:179476400-179485200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr2:179477000-179502400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr2:179477200-179484400	Weak transcription	Thymus	Thymus
44	chr2:179477200-179490800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr2:179477200-179492400	Weak transcription	HSMM	muscle
46	chr2:179478600-179483600	Genic enhancers	Fetal Heart	heart
47	chr2:179479000-179497400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:179479000-179500600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr2:179479600-179519400	Weak transcription	Fetal Thymus	thymus
50	chr2:179479800-179512000	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links