Variant report

Variant	rs72680442
Chromosome Location	chr4:121778039-121778040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10006503	0.81[ASN][1000 genomes]
rs10518380	0.82[AFR][1000 genomes]
rs10857076	0.81[ASN][1000 genomes]
rs12501569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397772	0.85[ASN][1000 genomes]
rs1450472	0.87[ASN][1000 genomes]
rs1450473	0.85[ASN][1000 genomes]
rs1450475	0.86[ASN][1000 genomes]
rs1511314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs171069	0.87[ASN][1000 genomes]
rs180730	0.86[ASN][1000 genomes]
rs180731	0.84[ASN][1000 genomes]
rs1839485	0.86[ASN][1000 genomes]
rs184668	0.87[ASN][1000 genomes]
rs184669	0.84[ASN][1000 genomes]
rs1901136	0.87[ASN][1000 genomes]
rs2034482	0.83[ASN][1000 genomes]
rs2167207	0.84[ASN][1000 genomes]
rs2597544	0.84[ASN][1000 genomes]
rs2597546	0.84[ASN][1000 genomes]
rs2597547	0.86[ASN][1000 genomes]
rs2597548	0.82[ASN][1000 genomes]
rs2597552	0.82[ASN][1000 genomes]
rs2667175	0.87[ASN][1000 genomes]
rs2667176	0.87[ASN][1000 genomes]
rs2667191	0.86[ASN][1000 genomes]
rs3106313	0.87[ASN][1000 genomes]
rs3114955	0.87[ASN][1000 genomes]
rs3115312	0.87[ASN][1000 genomes]
rs3115314	0.87[ASN][1000 genomes]
rs343166	0.86[ASN][1000 genomes]
rs343178	0.84[ASN][1000 genomes]
rs343180	0.84[ASN][1000 genomes]
rs343195	0.87[ASN][1000 genomes]
rs343197	0.87[ASN][1000 genomes]
rs343198	0.87[ASN][1000 genomes]
rs343200	0.87[ASN][1000 genomes]
rs343202	0.84[ASN][1000 genomes]
rs343203	0.84[ASN][1000 genomes]
rs343204	0.83[ASN][1000 genomes]
rs343205	0.83[ASN][1000 genomes]
rs343206	0.83[ASN][1000 genomes]
rs343209	0.85[ASN][1000 genomes]
rs343211	0.84[ASN][1000 genomes]
rs343212	0.84[ASN][1000 genomes]
rs4833187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4833688	0.82[AFR][1000 genomes]
rs72680432	0.82[AFR][1000 genomes]
rs72680434	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72680438	0.82[AFR][1000 genomes]
rs72680440	0.82[AFR][1000 genomes]
rs870252	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121756800-121779800	Weak transcription	Aorta	Aorta
2	chr4:121761200-121778200	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:121761200-121783600	Weak transcription	Pancreas	Pancrea
4	chr4:121763400-121778800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:121765800-121786600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:121766000-121786600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:121766200-121790800	Weak transcription	Ovary	ovary
8	chr4:121769000-121779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:121769200-121779600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:121771400-121781200	Weak transcription	HSMM	muscle
11	chr4:121771600-121783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:121771800-121779600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:121771800-121786800	Weak transcription	Fetal Lung	lung
14	chr4:121774400-121780400	Enhancers	NHDF-Ad	bronchial
15	chr4:121774800-121778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:121774800-121778600	Weak transcription	NHLF	lung
17	chr4:121775200-121779200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
19	chr4:121775400-121780000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:121776800-121779400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:121777000-121778600	Weak transcription	Fetal Heart	heart
22	chr4:121777000-121783600	Weak transcription	Fetal Intestine Small	intestine
23	chr4:121777600-121778400	Enhancers	Psoas Muscle	Psoas

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