Variant report

Variant	rs72682230
Chromosome Location	chr1:69427087-69427088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72678330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72680407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72680416	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72682249	1.00[AFR][1000 genomes]
rs72682250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871131	chr1:69323222-69427276	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
2	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69425400-69430600	Weak transcription	Aorta	Aorta
2	chr1:69426200-69427400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:69426200-69427400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:69426400-69440400	Weak transcription	Fetal Brain Female	brain
5	chr1:69426600-69427200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:69426600-69427200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:69426600-69427200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:69426600-69427200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:69426600-69427400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:69426600-69427400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:69426600-69427400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:69426600-69427400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:69426600-69427400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:69426600-69427600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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