Variant report

Variant	rs72683237
Chromosome Location	chr1:103329509-103329510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1932332	1.00[AFR][1000 genomes]
rs2056408	1.00[AFR][1000 genomes]
rs72683227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72683260	1.00[AFR][1000 genomes]
rs72683263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103328400-103329800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:103328600-103329800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:103329000-103330200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:103329000-103330800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:103329200-103329600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:103329200-103330000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:103329400-103329800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:103329400-103330000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:103329400-103330200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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