Variant report

Variant	rs72685365
Chromosome Location	chr4:130026917-130026918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1030830	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500341	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12503465	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12504200	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12512345	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17416188	0.92[EUR][1000 genomes]
rs17416706	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1900397	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2044523	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36195612	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3980331	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4975191	0.91[EUR][1000 genomes]
rs4975293	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4975294	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4975302	0.81[AFR][1000 genomes]
rs55925207	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59540486	0.92[EUR][1000 genomes]
rs6830023	0.92[EUR][1000 genomes]
rs6845314	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6847784	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72683669	0.90[EUR][1000 genomes]
rs72683673	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72683684	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72683693	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72685321	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72685324	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72685328	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72685351	0.89[ASN][1000 genomes]
rs72685352	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72685353	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7675408	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs921375	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs921376	0.83[ASN][1000 genomes]
rs921377	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130017600-130031400	Weak transcription	Pancreas	Pancrea
2	chr4:130017600-130031400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:130017600-130040400	Weak transcription	Lung	lung
4	chr4:130017800-130027200	Weak transcription	Small Intestine	intestine
5	chr4:130017800-130030800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:130017800-130031400	Weak transcription	Aorta	Aorta
7	chr4:130017800-130031400	Weak transcription	Left Ventricle	heart
8	chr4:130017800-130031400	Weak transcription	Ovary	ovary
9	chr4:130017800-130031400	Weak transcription	Right Ventricle	heart
10	chr4:130017800-130031600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:130017800-130032600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:130017800-130032800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:130017800-130033400	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:130017800-130033400	Weak transcription	Thymus	Thymus
15	chr4:130017800-130034200	Weak transcription	Colonic Mucosa	Colon
16	chr4:130018000-130028000	Weak transcription	NH-A	brain
17	chr4:130018000-130030200	Weak transcription	Primary T cells from cord blood	blood
18	chr4:130018000-130030400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:130018000-130030600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:130018000-130031000	Weak transcription	Fetal Thymus	thymus
21	chr4:130018000-130031400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:130018000-130031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:130018000-130031400	Weak transcription	Fetal Stomach	stomach
24	chr4:130018000-130032400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:130018000-130033000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr4:130018000-130033200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:130018000-130033400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:130018000-130034000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:130018000-130038000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr4:130018200-130030600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:130018200-130031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:130018200-130032400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:130018600-130032000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:130018800-130033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:130020200-130030400	Weak transcription	K562	blood
36	chr4:130020600-130030200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:130023600-130033400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr4:130024200-130030600	Weak transcription	Fetal Heart	heart
39	chr4:130025000-130030000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:130025000-130032000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:130025200-130033200	Weak transcription	Fetal Lung	lung
42	chr4:130025400-130030200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:130025400-130032200	Weak transcription	Fetal Brain Male	brain
44	chr4:130025600-130030400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:130025800-130030200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr4:130025800-130030400	Weak transcription	Adipose Nuclei	Adipose
47	chr4:130025800-130030600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:130025800-130030600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr4:130025800-130035000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:130026000-130030200	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links