Variant report

Variant	rs72687967
Chromosome Location	chr1:114082016-114082017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:113930978..113933860-chr1:114080103..114082897,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081026	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11102660	1.00[ASN][1000 genomes]
rs11588901	1.00[ASN][1000 genomes]
rs12117799	1.00[ASN][1000 genomes]
rs61817534	1.00[ASN][1000 genomes]
rs61819363	1.00[ASN][1000 genomes]
rs61819372	1.00[ASN][1000 genomes]
rs61819425	1.00[ASN][1000 genomes]
rs7515189	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv946153	chr1:114080236-114088844	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114072200-114095800	Weak transcription	Aorta	Aorta
2	chr1:114077200-114082600	Weak transcription	Fetal Intestine Large	intestine
3	chr1:114077200-114082800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:114077600-114083000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:114077800-114082400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:114077800-114082600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:114077800-114083000	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:114077800-114084400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:114077800-114084400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:114077800-114084400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:114078000-114090000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:114078600-114084200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:114078600-114084600	Weak transcription	HSMMtube	muscle
14	chr1:114079200-114083200	Weak transcription	Osteobl	bone
15	chr1:114079400-114084400	Weak transcription	NH-A	brain
16	chr1:114080000-114084400	Weak transcription	NHLF	lung
17	chr1:114080200-114082800	Weak transcription	Pancreas	Pancrea
18	chr1:114080200-114083000	Weak transcription	Ovary	ovary
19	chr1:114080600-114088600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:114081000-114082800	Weak transcription	NHDF-Ad	bronchial
21	chr1:114081400-114083000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:114081400-114084800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:114081600-114082800	Weak transcription	HMEC	breast
24	chr1:114081600-114084200	Weak transcription	NHEK	skin
25	chr1:114081600-114084400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:114081600-114084400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:114081600-114084800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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