Variant report
| Variant | rs72688067 |
|---|---|
| Chromosome Location | chr14:22201307-22201308 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12431441 | 1.00[AFR][1000 genomes] |
| rs12432570 | 1.00[AFR][1000 genomes] |
| rs12433499 | 1.00[AFR][1000 genomes] |
| rs12434018 | 1.00[ASN][1000 genomes] |
| rs12436495 | 1.00[AFR][1000 genomes] |
| rs12436701 | 1.00[AFR][1000 genomes] |
| rs34634018 | 1.00[ASN][1000 genomes] |
| rs34929219 | 1.00[ASN][1000 genomes] |
| rs72686072 | 1.00[AFR][1000 genomes] |
| rs72686076 | 1.00[AFR][1000 genomes] |
| rs72686078 | 1.00[AFR][1000 genomes] |
| rs72686082 | 1.00[AFR][1000 genomes] |
| rs72686097 | 1.00[AFR][1000 genomes] |
| rs72686098 | 1.00[AFR][1000 genomes] |
| rs72688028 | 1.00[AFR][1000 genomes] |
| rs72688032 | 1.00[AFR][1000 genomes] |
| rs72688034 | 1.00[AFR][1000 genomes] |
| rs72688037 | 1.00[AFR][1000 genomes] |
| rs72688040 | 1.00[AFR][1000 genomes] |
| rs72688046 | 1.00[AFR][1000 genomes] |
| rs72688047 | 1.00[AFR][1000 genomes] |
| rs72688073 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72688077 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72688079 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72688081 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72688082 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72688083 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72688088 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72689732 | 1.00[ASN][1000 genomes] |
| rs72689736 | 1.00[ASN][1000 genomes] |
| rs72689747 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1042309 | chr14:22042511-22866936 | Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 90 gene(s) | inside rSNPs | diseases |
| 2 | nsv456147 | chr14:22073473-22305071 | Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv563851 | chr14:22073473-22305071 | Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv510629 | chr14:22134425-22215842 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:22188400-22209600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr14:22198600-22202800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 3 | chr14:22198600-22203200 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
