Variant report

Variant	rs72688152
Chromosome Location	chr8:115598609-115598610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:117900151..117901737-chr8:115598411..115599914,2	MCF-7	breast:
2	chr8:115598053..115599853-chr8:115604312..115606791,3	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11988713	0.84[EUR][1000 genomes]
rs11995837	0.84[EUR][1000 genomes]
rs11996788	0.90[EUR][1000 genomes]
rs11998143	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140621	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs140623	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17644345	0.84[EUR][1000 genomes]
rs17644385	0.84[EUR][1000 genomes]
rs17644465	0.84[EUR][1000 genomes]
rs17644560	0.84[EUR][1000 genomes]
rs17644578	0.84[EUR][1000 genomes]
rs17644857	0.84[EUR][1000 genomes]
rs17716101	0.84[EUR][1000 genomes]
rs17717004	0.84[EUR][1000 genomes]
rs17717105	0.84[EUR][1000 genomes]
rs17717179	0.84[EUR][1000 genomes]
rs17717228	0.83[EUR][1000 genomes]
rs28373052	0.84[EUR][1000 genomes]
rs28376828	0.84[EUR][1000 genomes]
rs28668274	0.84[EUR][1000 genomes]
rs28865001	0.84[EUR][1000 genomes]
rs28888712	0.84[EUR][1000 genomes]
rs4639552	0.84[EUR][1000 genomes]
rs66671867	0.84[EUR][1000 genomes]
rs6993330	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688119	0.84[EUR][1000 genomes]
rs72688122	0.84[EUR][1000 genomes]
rs72688150	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688156	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688157	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688158	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688160	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688182	0.82[EUR][1000 genomes]
rs72688196	0.90[EUR][1000 genomes]
rs72688199	0.90[EUR][1000 genomes]
rs72690215	0.89[EUR][1000 genomes]
rs7460670	0.84[EUR][1000 genomes]
rs931613	0.90[EUR][1000 genomes]
rs931614	0.90[EUR][1000 genomes]
rs9792319	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891367	chr8:115293861-115635630	Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1018280	chr8:115307838-116189192	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv539726	chr8:115307838-116189192	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv891372	chr8:115351857-116037119	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv891377	chr8:115395451-116110725	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1021511	chr8:115423794-115626389	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1851831	chr8:115430637-115656140	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1844991	chr8:115450682-115723577	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1031156	chr8:115551507-115620846	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1018579	chr8:115555724-115620846	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1028687	chr8:115561602-115618764	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1033963	chr8:115561602-115620846	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv516943	chr8:115562322-115603659	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv438078	chr8:115584106-115654884	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv891387	chr8:115591466-115650409	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:115597600-115599200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr8:115597600-115599600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr8:115597800-115599600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr8:115598000-115599200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr8:115598200-115599000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr8:115598200-115599000	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr8:115598200-115599200	Active TSS	Hela-S3	cervix
8	chr8:115598400-115598800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr8:115598600-115599000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:115598600-115599200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr8:115598600-115599200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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