Variant report

Variant	rs7268822
Chromosome Location	chr20:23020918-23020919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58335172	1.00[EUR][1000 genomes]
rs7266993	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016000-23026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
3	chr20:23016600-23023600	Weak transcription	Gastric	stomach
4	chr20:23017600-23024600	Weak transcription	Spleen	Spleen
5	chr20:23019400-23021000	Enhancers	HSMMtube	muscle
6	chr20:23019400-23021600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:23020000-23021000	Enhancers	HMEC	breast
8	chr20:23020200-23021000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:23020200-23021200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr20:23020400-23021400	Enhancers	Fetal Heart	heart
11	chr20:23020400-23021400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr20:23020600-23021000	Enhancers	Right Ventricle	heart
13	chr20:23020800-23021000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr20:23020800-23021000	Enhancers	Esophagus	oesophagus
15	chr20:23020800-23021000	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr20:23020800-23021000	ZNF genes & repeats	Lung	lung
17	chr20:23020800-23026400	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links