Variant report

Variant	rs72688437
Chromosome Location	chr4:99406528-99406529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12508322	0.83[AMR][1000 genomes]
rs4699636	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7674194	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99389200-99407000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:99389200-99413000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:99389400-99419800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:99390800-99413200	Weak transcription	Brain Anterior Caudate	brain
5	chr4:99392600-99408600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:99392600-99411800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:99394000-99413200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:99396200-99431400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:99396400-99412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:99397600-99439400	Weak transcription	Primary B cells from cord blood	blood
11	chr4:99398000-99407600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:99399600-99407600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:99400000-99412600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:99400000-99429800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:99400200-99407200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:99400200-99411200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:99400400-99419200	Weak transcription	Fetal Thymus	thymus
18	chr4:99401600-99406600	Enhancers	Stomach Mucosa	stomach
19	chr4:99402400-99413000	Weak transcription	Brain Germinal Matrix	brain
20	chr4:99402600-99409200	Weak transcription	Lung	lung
21	chr4:99402600-99410600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:99402600-99413200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:99402600-99413200	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:99402600-99413200	Weak transcription	Fetal Stomach	stomach
25	chr4:99402600-99422800	Weak transcription	Aorta	Aorta
26	chr4:99402600-99423600	Weak transcription	Primary T cells from cord blood	blood
27	chr4:99402600-99426800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:99403000-99411000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:99403200-99411400	Weak transcription	Fetal Brain Male	brain
30	chr4:99404000-99413200	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:99404200-99411000	Weak transcription	Brain Substantia Nigra	brain
32	chr4:99404600-99407000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:99404600-99407200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:99404600-99413000	Weak transcription	Brain Angular Gyrus	brain
35	chr4:99404600-99413200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr4:99404800-99406600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr4:99404800-99407000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:99404800-99407400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr4:99404800-99407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:99404800-99408400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:99404800-99409200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:99404800-99409600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:99404800-99410600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:99404800-99412400	Weak transcription	NHLF	lung
45	chr4:99404800-99412600	Weak transcription	Esophagus	oesophagus
46	chr4:99404800-99413200	Weak transcription	Ovary	ovary
47	chr4:99404800-99419200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr4:99404800-99419800	Weak transcription	Spleen	Spleen
49	chr4:99405000-99406600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr4:99405200-99406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links