Variant report

Variant	rs72688751
Chromosome Location	chr4:130256802-130256803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6813691	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879932	chr4:130167642-130264517	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130251000-130257200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:130251000-130262800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:130255000-130257000	Enhancers	Fetal Lung	lung
4	chr4:130256000-130258200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:130256000-130259600	Enhancers	Fetal Brain Female	brain
6	chr4:130256200-130258000	Enhancers	Brain Germinal Matrix	brain
7	chr4:130256400-130257400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:130256400-130258000	Enhancers	Fetal Muscle Leg	muscle
9	chr4:130256400-130258400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:130256600-130258000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:130256600-130258400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:130256800-130257000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:130256800-130257200	Weak transcription	Fetal Brain Male	brain
14	chr4:130256800-130258000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:130256800-130258200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:130256800-130263000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links