Variant report

Variant	rs72689029
Chromosome Location	chr14:80980087-80980088
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2167149	0.96[EUR][1000 genomes]
rs72687396	0.83[AFR][1000 genomes]
rs72689020	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72689031	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
3	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
4	chr14:80958200-80981200	Weak transcription	Fetal Thymus	thymus
5	chr14:80958200-80981200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:80958800-80981400	Weak transcription	HSMM	muscle
7	chr14:80960200-80981000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:80962200-80997800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:80964600-80981600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:80966600-80981400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:80966800-80981400	Weak transcription	A549	lung
12	chr14:80967400-80981600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:80967800-80981800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:80968200-80981000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:80968400-80990400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:80968800-80981200	Weak transcription	Thymus	Thymus
17	chr14:80971800-80994400	Weak transcription	Primary B cells from cord blood	blood
18	chr14:80978600-81006600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:80978800-80982000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:80979400-80986200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:80979400-80986200	Strong transcription	Dnd41	blood
22	chr14:80979600-80991600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr14:80979600-80993200	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:80979800-80981000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr14:80979800-80990200	Weak transcription	Brain Germinal Matrix	brain
26	chr14:80980000-80981600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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