Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10006399	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007291	0.81[ASN][1000 genomes]
rs10010431	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028542	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033633	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1125504	0.94[AMR][1000 genomes]
rs12643000	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12644652	0.94[AMR][1000 genomes]
rs12648697	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353656	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2865746	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55851317	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59525406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671933	0.94[AMR][1000 genomes]
rs72671941	0.94[AMR][1000 genomes]
rs72671942	0.94[AMR][1000 genomes]
rs72689730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689746	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72689748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7685772	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2757944	chr4:97509566-97809092	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759268	chr4:97509566-97809092	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv879636	chr4:97563218-97680928	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv879637	chr4:97563218-97685296	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97563000-97564000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:97563400-97564200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:97563600-97564000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:97563600-97564200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:97563600-97564200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:97563600-97564200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:97563600-97564200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:97563600-97564200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:97563600-97564200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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