Variant report

Variant	rs72690422
Chromosome Location	chr4:103139877-103139878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11733665	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72692226	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103138400-103140600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:103139200-103140400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:103139400-103140600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:103139600-103140400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:103139600-103140400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:103139600-103140800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:103139600-103141200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:103139600-103141400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:103139800-103140000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:103139800-103140600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:103139800-103140800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:103139800-103140800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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