Variant report

Variant	rs72690641
Chromosome Location	chr1:103706600-103706601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12063499	0.84[EUR][1000 genomes]
rs12065731	0.91[AMR][1000 genomes]
rs12070974	0.82[EUR][1000 genomes]
rs12092464	0.88[EUR][1000 genomes]
rs60582212	0.88[EUR][1000 genomes]
rs60646698	0.88[EUR][1000 genomes]
rs61141825	0.88[EUR][1000 genomes]
rs6577364	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67273779	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72687249	0.86[EUR][1000 genomes]
rs72687262	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72688823	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72688850	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72688858	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72690651	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72690665	0.88[EUR][1000 genomes]
rs7555597	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9651150	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv432554	chr1:103673437-104128773	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103706000-103706600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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