Variant report

Variant	rs72692108
Chromosome Location	chr14:24408879-24408880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24133486..24136162-chr14:24408372..24410198,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NRL-1	chr14:24407940-24410367	ENSG00000215256.3
2	lnc-NRL-1	chr14:24408822-24410367	ENSG00000215256.3
3	lnc-NRL-1	chr14:24407940-24410367	NONHSAT035952
4	lnc-NRL-1	chr14:24407940-24410367	NONHSAT035953
5	lnc-NRL-1	chr14:24407940-24410367	NR_023923
6	lnc-NRL-1	chr14:24407940-24410367	NR_023921
7	lnc-NRL-1	chr14:24407940-24410367	NONHSAT035954

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28578611	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1217	chr14:24400565-24512689	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv89	chr14:24405198-24475213	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24399400-24410000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:24399400-24411000	Weak transcription	Brain Anterior Caudate	brain
3	chr14:24399600-24409000	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:24399600-24409200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:24400000-24420000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:24400400-24411800	Weak transcription	HMEC	breast
7	chr14:24400600-24409600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:24400600-24421000	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:24400800-24409000	Weak transcription	Aorta	Aorta
10	chr14:24401400-24409800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:24401800-24409800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:24402200-24410000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:24402200-24421200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:24402400-24409800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:24403000-24413200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:24403200-24409000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr14:24403200-24409000	Weak transcription	Fetal Stomach	stomach
18	chr14:24403200-24409200	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:24403200-24409800	Weak transcription	Ovary	ovary
20	chr14:24404800-24409400	Enhancers	HepG2	liver
21	chr14:24405000-24409200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:24405200-24411800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:24405400-24409800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:24405600-24411800	Weak transcription	Esophagus	oesophagus
25	chr14:24405600-24422400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:24405800-24410000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr14:24405800-24421400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:24405800-24422400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:24406000-24410000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:24406200-24411400	Weak transcription	Stomach Mucosa	stomach
31	chr14:24406400-24409200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr14:24406600-24413400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:24406600-24416200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:24406800-24414600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:24407000-24409800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:24407000-24409800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr14:24407000-24410200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:24407000-24410400	Weak transcription	Pancreas	Pancrea
39	chr14:24407000-24411800	Weak transcription	Gastric	stomach
40	chr14:24407000-24420000	Weak transcription	HSMM	muscle
41	chr14:24407000-24421000	Weak transcription	Fetal Intestine Large	intestine
42	chr14:24407000-24421200	Weak transcription	Fetal Kidney	kidney
43	chr14:24407200-24409800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:24407200-24413200	Weak transcription	Placenta	Placenta
45	chr14:24407400-24409000	Weak transcription	Dnd41	blood
46	chr14:24407400-24410000	Weak transcription	Spleen	Spleen
47	chr14:24407400-24412400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr14:24407400-24413800	Weak transcription	Fetal Brain Female	brain
49	chr14:24407400-24422400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr14:24407600-24409400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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