Variant report

Variant	rs72692826
Chromosome Location	chr1:149949971-149949972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:149945190..149951055-chr1:149955630..149959988,5	K562	blood:
2	chr1:149814234..149816861-chr1:149948391..149950501,2	MCF-7	breast:
3	chr1:149949320..149950830-chr1:149980515..149982662,2	MCF-7	breast:
4	chr1:149949620..149952507-chr1:150022418..150024343,2	MCF-7	breast:
5	chr1:149856779..149862497-chr1:149944257..149950166,8	MCF-7	breast:
6	chr1:149949648..149953559-chr1:149958432..149961750,3	MCF-7	breast:
7	chr1:149949788..149952125-chr1:149969648..149972442,2	MCF-7	breast:
8	chr1:149947171..149952733-chr1:149953125..149958126,9	MCF-7	breast:
9	chr1:149946060..149948696-chr1:149949205..149952308,4	MCF-7	breast:
10	chr1:149943549..149946220-chr1:149949317..149951541,2	K562	blood:
11	chr1:149940562..149943981-chr1:149948122..149951326,4	MCF-7	breast:
12	chr1:149947816..149951432-chr1:149980762..149983569,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000220323	Chromatin interaction
ENSG00000183558	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000163113	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs68002561	1.00[ASN][1000 genomes]
rs72692825	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149922400-149951600	Weak transcription	Small Intestine	intestine
2	chr1:149929600-149950200	Strong transcription	Osteobl	bone
3	chr1:149930800-149959000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:149934200-149958000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:149935600-149950400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:149938000-149950600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:149938000-149951000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:149938000-149953000	Weak transcription	Thymus	Thymus
9	chr1:149938200-149950600	Weak transcription	Stomach Mucosa	stomach
10	chr1:149939600-149951600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:149939600-149951600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:149939600-149953400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:149939600-149958000	Weak transcription	Aorta	Aorta
14	chr1:149941200-149957400	Weak transcription	Spleen	Spleen
15	chr1:149943400-149951200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr1:149944200-149951600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:149944800-149957800	Weak transcription	NHDF-Ad	bronchial
18	chr1:149945000-149950600	Weak transcription	Primary T cells from cord blood	blood
19	chr1:149945400-149950600	Weak transcription	Fetal Heart	heart
20	chr1:149945600-149950200	Weak transcription	Psoas Muscle	Psoas
21	chr1:149946400-149957200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:149946400-149959000	Weak transcription	Gastric	stomach
23	chr1:149947000-149952200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:149947600-149950600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:149947600-149950800	Weak transcription	NH-A	brain
26	chr1:149947600-149951200	Weak transcription	Brain Germinal Matrix	brain
27	chr1:149947600-149963600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:149947800-149950600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:149947800-149950800	Weak transcription	Right Ventricle	heart
30	chr1:149947800-149958200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:149947800-149959200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:149948000-149950800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:149948200-149950400	Weak transcription	HMEC	breast
34	chr1:149948200-149950400	Weak transcription	HUVEC	blood vessel
35	chr1:149948200-149950600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr1:149948200-149950600	Weak transcription	Fetal Kidney	kidney
37	chr1:149948200-149950600	Weak transcription	A549	lung
38	chr1:149948200-149950600	Weak transcription	HSMM	muscle
39	chr1:149948200-149950800	Weak transcription	Brain Hippocampus Middle	brain
40	chr1:149948200-149951400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:149948200-149951600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr1:149948200-149951600	Weak transcription	Brain Angular Gyrus	brain
43	chr1:149948200-149952000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:149948200-149952600	Weak transcription	Colonic Mucosa	Colon
45	chr1:149948200-149957400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr1:149948200-149958400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr1:149948200-149967600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:149948200-149967600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:149948200-149973000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr1:149948200-149977400	Weak transcription	Fetal Muscle Trunk	muscle

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