Variant report

Variant	rs72696303
Chromosome Location	chr14:24892266-24892267
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24886534..24888319-chr14:24890597..24892765,3	MCF-7	breast:
2	chr14:24803679..24805224-chr14:24889456..24892328,2	K562	blood:
3	chr14:24788288..24791013-chr14:24890280..24892677,2	MCF-7	breast:
4	chr14:24835155..24836701-chr14:24891662..24893219,2	MCF-7	breast:
5	chr14:24870670..24873319-chr14:24891504..24893162,2	K562	blood:

Variant related genes	Relation type
ENSG00000100968	Chromatin interaction
ENSG00000129467	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72696330	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24884200-24894200	Weak transcription	Left Ventricle	heart
2	chr14:24885200-24897400	Weak transcription	Lung	lung
3	chr14:24886600-24894400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:24888200-24896000	Weak transcription	Right Atrium	heart
5	chr14:24888400-24896000	Weak transcription	Esophagus	oesophagus
6	chr14:24888400-24897000	Weak transcription	Spleen	Spleen
7	chr14:24888800-24892600	Weak transcription	Gastric	stomach
8	chr14:24888800-24894200	Weak transcription	Ovary	ovary
9	chr14:24889600-24895800	Weak transcription	Pancreas	Pancrea
10	chr14:24890600-24893000	Enhancers	Primary hematopoietic stem cells	blood
11	chr14:24891200-24892600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:24891200-24892800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:24891200-24892800	Enhancers	Dnd41	blood
14	chr14:24891200-24893000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:24891200-24893000	Enhancers	K562	blood
16	chr14:24891400-24892400	Enhancers	Primary B cells from peripheral blood	blood
17	chr14:24891400-24892400	Enhancers	Fetal Intestine Large	intestine
18	chr14:24891400-24892400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr14:24891400-24892600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:24891400-24893000	Enhancers	Primary T cells from cord blood	blood
21	chr14:24891600-24892400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr14:24891600-24892400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr14:24891600-24892400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr14:24891600-24892400	Enhancers	Colonic Mucosa	Colon
25	chr14:24891600-24892400	Enhancers	Fetal Intestine Small	intestine
26	chr14:24891600-24892600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:24891600-24892800	Enhancers	Fetal Thymus	thymus
28	chr14:24891800-24892600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr14:24891800-24892600	Enhancers	Small Intestine	intestine
30	chr14:24892000-24892400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:24892000-24892400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:24892000-24892400	Flanking Active TSS	Stomach Mucosa	stomach
33	chr14:24892000-24892800	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr14:24892000-24893000	Enhancers	Liver	Liver
35	chr14:24892000-24893000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr14:24892000-24894400	Enhancers	HUVEC	blood vessel
37	chr14:24892000-24894600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr14:24892000-24896400	Weak transcription	Thymus	Thymus
39	chr14:24892200-24892600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr14:24892200-24892800	Flanking Bivalent TSS/Enh	HepG2	liver
41	chr14:24892200-24893000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr14:24892200-24893200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:24892200-24894400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:24892200-24894400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:24892200-24894400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:24892200-24894600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr14:24892200-24894600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:24892200-24898200	Weak transcription	GM12878-XiMat	blood

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