Variant report

Variant	rs72696604
Chromosome Location	chr9:8542943-8542944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs4625085	1.00[EUR][1000 genomes]
rs55781919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56052876	1.00[EUR][1000 genomes]
rs56172205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56236690	1.00[AMR][1000 genomes]
rs56280254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56284876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56337627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692978	1.00[EUR][1000 genomes]
rs72693000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694710	1.00[EUR][1000 genomes]
rs72694711	1.00[EUR][1000 genomes]
rs72694713	1.00[AMR][1000 genomes]
rs72694726	1.00[EUR][1000 genomes]
rs72694727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694733	1.00[EUR][1000 genomes]
rs72694735	1.00[EUR][1000 genomes]
rs72694752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694779	1.00[AMR][1000 genomes]
rs72694787	1.00[AMR][1000 genomes]
rs72694796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72694799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696692	1.00[AMR][1000 genomes]
rs9299068	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528345	chr9:8538919-8554938	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
2	chr9:8518400-8555200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8533400-8552200	Weak transcription	Fetal Brain Male	brain
4	chr9:8534600-8564000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:8537000-8550200	Weak transcription	Fetal Brain Female	brain
6	chr9:8541000-8543400	Enhancers	Brain Cingulate Gyrus	brain
7	chr9:8541400-8543400	Enhancers	Brain Substantia Nigra	brain
8	chr9:8541600-8557600	Weak transcription	Fetal Stomach	stomach
9	chr9:8542000-8543000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:8542200-8543400	Enhancers	Brain Hippocampus Middle	brain
11	chr9:8542400-8543000	Enhancers	Brain Anterior Caudate	brain
12	chr9:8542600-8543000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr9:8542600-8543600	Enhancers	Brain Angular Gyrus	brain
14	chr9:8542600-8543800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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