Variant report

Variant	rs72697459
Chromosome Location	chr9:18017698-18017699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18016854..18017748-chr9:18207853..18208432,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11790282	1.00[AFR][1000 genomes]
rs11794764	1.00[AFR][1000 genomes]
rs11794779	1.00[AFR][1000 genomes]
rs17196795	1.00[AFR][1000 genomes]
rs17775838	1.00[AFR][1000 genomes]
rs55645733	1.00[AFR][1000 genomes]
rs55790445	1.00[AFR][1000 genomes]
rs56116908	1.00[AFR][1000 genomes]
rs56263104	1.00[AFR][1000 genomes]
rs56307628	1.00[AFR][1000 genomes]
rs72695923	1.00[AFR][1000 genomes]
rs72695941	1.00[AFR][1000 genomes]
rs72695943	1.00[AFR][1000 genomes]
rs72695949	1.00[AFR][1000 genomes]
rs72695964	1.00[AFR][1000 genomes]
rs72695993	1.00[AFR][1000 genomes]
rs72695997	1.00[AFR][1000 genomes]
rs72697451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72697460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72699447	1.00[AFR][1000 genomes]
rs72699461	1.00[AFR][1000 genomes]
rs72699473	1.00[AFR][1000 genomes]
rs72699475	1.00[AFR][1000 genomes]
rs72699476	1.00[AFR][1000 genomes]
rs72699477	1.00[AFR][1000 genomes]
rs72699483	1.00[AFR][1000 genomes]
rs72699484	1.00[AFR][1000 genomes]
rs72699490	1.00[AFR][1000 genomes]
rs72699502	1.00[AFR][1000 genomes]
rs72701514	1.00[AFR][1000 genomes]
rs72701516	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18004600-18018600	Weak transcription	Aorta	Aorta
2	chr9:18012000-18018200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:18016400-18022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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