Variant report

Variant	rs72697916
Chromosome Location	chr4:165834908-165834909
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:51)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:51 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:165834709-165834940	K562	blood:	n/a	n/a
2	CTCF	chr4:165834732-165834957	K562	blood:	n/a	n/a
3	CTCF	chr4:165834778-165834913	GM19239	blood:	n/a	n/a
4	CTCF	chr4:165834711-165834919	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr4:165834760-165834910	GM12875	blood:	n/a	n/a
6	CTCF	chr4:165834762-165834944	Medullo	brain:	n/a	n/a
7	CTCF	chr4:165834760-165834910	HAc	cerebellar:	n/a	n/a
8	CEBPB	chr4:165834769-165834969	K562	blood:	n/a	n/a
9	RAD21	chr4:165834671-165834991	HepG2	liver:	n/a	n/a
10	CTCF	chr4:165834880-165835030	GM12868	blood:	n/a	n/a
11	CTCF	chr4:165834780-165834930	GM06990	blood:	n/a	n/a
12	CTCF	chr4:165834794-165834943	GM13977	blood:	n/a	n/a
13	CTCF	chr4:165834718-165835018	GM12878	blood:	n/a	n/a
14	CTCF	chr4:165834772-165834945	MCF-7	breast:	n/a	n/a
15	RAD21	chr4:165834690-165834920	GM12878	blood:	n/a	n/a
16	CTCF	chr4:165834780-165834930	GM12878	blood:	n/a	n/a
17	CTCF	chr4:165834780-165834930	GM12872	blood:	n/a	n/a
18	RAD21	chr4:165834704-165835017	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr4:165834713-165834922	HepG2	liver:	n/a	n/a
20	RAD21	chr4:165834626-165835030	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr4:165834860-165835010	GM12866	blood:	n/a	n/a
22	CTCF	chr4:165834788-165834928	GM10248	blood:	n/a	n/a
23	CTCF	chr4:165834780-165834930	GM12864	blood:	n/a	n/a
24	CTCF	chr4:165834773-165834930	LNCaP	prostate:	n/a	n/a
25	RAD21	chr4:165834578-165835097	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr4:165834780-165834930	WERI-Rb-1	eye:	n/a	n/a
27	CTCF	chr4:165834752-165834968	MCF-7	breast:	n/a	n/a
28	CTCF	chr4:165834814-165834956	LNCaP	prostate:	n/a	n/a
29	CTCF	chr4:165834880-165835030	RPTEC	kidney:	n/a	n/a
30	CTCF	chr4:165834747-165834912	Hela-S3	cervix:	n/a	n/a
31	CTCF	chr4:165834763-165834933	Gliobla	brain:	n/a	n/a
32	CTCF	chr4:165834760-165834910	HRPEpiC	eye:	n/a	n/a
33	CTCF	chr4:165834780-165834930	GM12874	blood:	n/a	n/a
34	SMC3	chr4:165834721-165835000	GM12878	blood:	n/a	n/a
35	CTCF	chr4:165834760-165834910	HEK293	kidney:	n/a	n/a
36	RAD21	chr4:165834687-165834937	GM12878	blood:	n/a	n/a
37	CTCF	chr4:165834779-165834909	HepG2	liver:	n/a	n/a
38	CTCF	chr4:165834774-165834953	GM10266	blood:	n/a	n/a
39	CTCF	chr4:165834800-165834950	GM12872	blood:	n/a	n/a
40	RAD21	chr4:165834772-165834933	HepG2	liver:	n/a	n/a
41	CTCF	chr4:165834760-165834910	Caco-2	colon:	n/a	n/a
42	CTCF	chr4:165834772-165834937	GM20000	blood:	n/a	n/a
43	CTCF	chr4:165834710-165834999	H1-hESC	embryonic stem cell:	n/a	n/a
44	CEBPB	chr4:165834764-165834970	HepG2	liver:	n/a	n/a
45	CTCF	chr4:165834780-165834930	GM12865	blood:	n/a	n/a
46	CTCF	chr4:165834760-165834910	GM12878	blood:	n/a	n/a
47	CTCF	chr4:165834748-165834970	GM12878	blood:	n/a	n/a
48	CTCF	chr4:165834737-165834964	K562	blood:	n/a	n/a
49	CTCF	chr4:165834880-165835030	GM06990	blood:	n/a	n/a
50	RAD21	chr4:165834733-165834997	GM12878	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:165833603..165835632-chr4:165838442..165840941,2	MCF-7	breast:

No data

Variant related genes	Relation type
TRIM60P14	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10002643	0.82[ASN][1000 genomes]
rs10014066	0.82[ASN][1000 genomes]
rs12505948	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12505979	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12505996	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12506957	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12507070	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12507485	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12511116	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13106523	0.82[ASN][1000 genomes]
rs17487197	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17487218	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17584342	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28415564	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28440034	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28611087	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34745909	0.82[ASN][1000 genomes]
rs55973336	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57749446	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58840274	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59997868	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856614	0.82[ASN][1000 genomes]
rs6856935	0.82[ASN][1000 genomes]
rs72695876	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72695877	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72695879	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72695881	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72695882	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72695883	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72695884	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72695888	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72695894	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72695895	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72695897	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72695901	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72695902	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72697903	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72697904	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72697906	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72697908	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72697911	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72697914	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72697920	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461821	chr4:165402309-165859951	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv596037	chr4:165402309-165859951	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019150	chr4:165505585-165907924	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	esv2760864	chr4:165771791-165835433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv880382	chr4:165793001-165964290	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	esv2757965	chr4:165801816-165976350	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	esv2759299	chr4:165801816-165976350	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
12	nsv528686	chr4:165814359-165930168	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	esv1797417	chr4:165826948-165844648	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv967807	chr4:165833967-165843736	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165834800-165835600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links