Variant report

Variant	rs72700255
Chromosome Location	chr1:154759258-154759259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154756309..154759267-chr1:154770160..154772108,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11584635	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11590325	0.82[ASN][1000 genomes]
rs17719312	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1891806	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72700254	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72700257	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv872452	chr1:154750989-154769561	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154740800-154764000	Weak transcription	Right Ventricle	heart
2	chr1:154746200-154759600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:154746600-154763800	Weak transcription	Brain Angular Gyrus	brain
4	chr1:154748800-154760600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:154748800-154764000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:154749200-154759600	Weak transcription	Fetal Brain Female	brain
7	chr1:154750000-154763800	Weak transcription	HSMMtube	muscle
8	chr1:154754200-154760800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:154755200-154760800	Enhancers	Thymus	Thymus
10	chr1:154756000-154759400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:154756000-154767200	Enhancers	Fetal Thymus	thymus
12	chr1:154757400-154759800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:154757400-154760000	Weak transcription	Brain Substantia Nigra	brain
14	chr1:154757600-154763800	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:154757800-154759600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:154757800-154759600	Weak transcription	Spleen	Spleen
17	chr1:154757800-154760400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:154757800-154760600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:154757800-154761000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:154758000-154759400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:154758000-154759800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:154758000-154759800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:154758000-154760000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:154758000-154760200	Weak transcription	Brain Anterior Caudate	brain
25	chr1:154758000-154760400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:154758000-154763200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:154758000-154763200	Weak transcription	Dnd41	blood
28	chr1:154758000-154763800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:154758200-154761000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:154758200-154763200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:154758200-154763200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:154758400-154762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:154758400-154762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:154758400-154763400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:154758400-154763800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr1:154758600-154759800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:154758600-154759800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr1:154758600-154760200	Enhancers	GM12878-XiMat	blood
39	chr1:154758600-154763000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr1:154758600-154763000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:154758600-154763800	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:154758800-154762800	Weak transcription	Primary T cells from cord blood	blood
43	chr1:154758800-154762800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:154758800-154762800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:154758800-154763000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr1:154758800-154763800	Weak transcription	Right Atrium	heart
47	chr1:154759000-154759400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr1:154759000-154759400	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links