Variant report

Variant	rs72700568
Chromosome Location	chr9:14427745-14427746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14406314..14409273-chr9:14426314..14429209,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11790783	0.86[AFR][1000 genomes]
rs55769910	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892600	chr9:14370172-14469146	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14419800-14428400	Weak transcription	Fetal Stomach	stomach
2	chr9:14420000-14433400	Weak transcription	Fetal Brain Female	brain
3	chr9:14424200-14433200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:14424400-14428200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:14424400-14429800	Enhancers	Fetal Heart	heart
6	chr9:14424600-14428600	Weak transcription	HUVEC	blood vessel
7	chr9:14425200-14428400	Weak transcription	Fetal Lung	lung
8	chr9:14425400-14428200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:14425400-14428400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:14425400-14428400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:14425400-14428400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:14425400-14428400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:14425400-14428400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:14425400-14428600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:14425400-14428600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:14425400-14428800	Weak transcription	Right Ventricle	heart
17	chr9:14425400-14429000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:14425400-14429000	Weak transcription	Right Atrium	heart
19	chr9:14425400-14432600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:14425400-14433200	Weak transcription	Fetal Kidney	kidney
21	chr9:14425600-14434800	Weak transcription	Left Ventricle	heart
22	chr9:14426600-14428000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:14427600-14427800	Enhancers	Psoas Muscle	Psoas

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