Variant report

Variant	rs72700610
Chromosome Location	chr1:159767553-159767554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:159767480-159767630	GM12873	blood:	n/a	n/a
2	PRDM1	chr1:159767342-159767591	Hela-S3	cervix:	n/a	chr1:159767484-159767499
3	CTCF	chr1:159767440-159767590	AG04449	skin:	n/a	n/a
4	CTCF	chr1:159767520-159767670	SK-N-SH_RA	brain:	n/a	n/a
5	CTCF	chr1:159767500-159767650	GM12875	blood:	n/a	n/a
6	CTCF	chr1:159767480-159767630	AG04449	skin:	n/a	n/a
7	CTCF	chr1:159767440-159767590	HRE	kidney:	n/a	n/a
8	CTCF	chr1:159767480-159767630	AG04450	lung:	n/a	n/a
9	CTCF	chr1:159767420-159767570	K562	blood:	n/a	n/a
10	CTCF	chr1:159767440-159767590	GM12873	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:159750106..159750732-chr1:159767420..159768298,2	MCF-7	breast:
2	chr1:159756652..159760361-chr1:159765566..159768582,3	K562	blood:
3	chr1:159765477..159767886-chr1:159894615..159896169,2	MCF-7	breast:
4	chr1:159767187..159770392-chr1:159770720..159774821,3	K562	blood:
5	chr1:159760951..159764398-chr1:159766034..159769710,4	K562	blood:
6	chr1:159766964..159768687-chr1:159770720..159772880,2	K562	blood:

No data

Variant related genes	Relation type
FCRL6	TF binding region
ENSG00000158716	Chromatin interaction
ENSG00000158710	Chromatin interaction
ENSG00000181036	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs4656246	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55742616	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55997732	0.87[EUR][1000 genomes]
rs61821619	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821626	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821627	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821659	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61823160	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61823162	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61823163	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61823164	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61823165	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427496	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72700609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700611	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700615	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700621	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700626	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700627	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72700628	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72700632	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72700634	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7519854	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525794	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528163	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7549918	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159765600-159770000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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