Variant report

Variant	rs72703096
Chromosome Location	chr15:35401066-35401067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12442520	1.00[EUR][1000 genomes]
rs72698509	1.00[AMR][1000 genomes]
rs72703077	1.00[EUR][1000 genomes]
rs72703093	1.00[EUR][1000 genomes]
rs72703098	1.00[EUR][1000 genomes]
rs72703102	1.00[EUR][1000 genomes]
rs72704759	1.00[AMR][1000 genomes]
rs72704761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704762	1.00[EUR][1000 genomes]
rs72704784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704798	1.00[AMR][1000 genomes]
rs72704800	1.00[AMR][1000 genomes]
rs72704801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72705004	1.00[EUR][1000 genomes]
rs72706603	1.00[EUR][1000 genomes]
rs72706604	1.00[EUR][1000 genomes]
rs74008035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74008036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv569155	chr15:35371869-35408386	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv2761867	chr15:35395441-35409539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35400000-35401800	Enhancers	Liver	Liver
2	chr15:35400600-35401200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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